title: "Meta-analysis of genes"
subtitle: "Draft, 25-05-2025v6c"
output:
html_document:
toc: true
toc_float:
collapsed: false
smooth_scroll: false
code_folding: hide
number_sections: false
theme: spacelab
---
# MA_HC_Oligodendrocitos_FM {- .tabset .tabset-fade .tabset-pills}
```r
library(dplyr)
library(knitr)
library(DT)
load("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/FM/MA_HC_Oligodendrocitos_FM.RData")
```ENSG00000029363
Statistics of ENSG00000029363 meta-analisys
kable(sig.genes.df['ENSG00000029363',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000029363 | BCLAF1 | 0.0959106 | 0.1291068 | 0.1623029 | 0 | 1.992668 | 0.3692305 | 0.0169371 | 0 | 0 | 1 | 0 | 0 | 10.38395 | 3 | 3 | Study43,GSE163577 | 0.6424502 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/FM/plots/ENSG00000029363_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/FM/plots/ENSG00000029363_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/FM/plots/ENSG00000029363_INFLUENCE.png")
ENSG00000070214
Statistics of ENSG00000070214 meta-analisys
kable(sig.genes.df['ENSG00000070214',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000070214 | SLC44A1 | -0.3416021 | -0.2830477 | -0.2244932 | 0 | 1.887161 | 0.3892317 | 0.0298753 | 0 | 0 | 1 | 0 | 0 | 16.95512 | 3 | 3 | syn52293442_hc | 0.6087984 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/FM/plots/ENSG00000070214_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/FM/plots/ENSG00000070214_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/FM/plots/ENSG00000070214_INFLUENCE.png")
ENSG00000105695
Statistics of ENSG00000105695 meta-analisys
kable(sig.genes.df['ENSG00000105695',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000105695 | MAG | 0.1552044 | 0.22428 | 0.2933555 | 0 | 1.072844 | 0.5848371 | 0.0352433 | 0 | 0 | 1 | 2e-07 | 1.8e-06 | 6.757944 | 3 | 3 | GSE163577 | 0.4723533 | GSE163577 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/FM/plots/ENSG00000105695_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/FM/plots/ENSG00000105695_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/FM/plots/ENSG00000105695_INFLUENCE.png")
ENSG00000105976
Statistics of ENSG00000105976 meta-analisys
kable(sig.genes.df['ENSG00000105976',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000105976 | MET | 0.005597 | 0.0082252 | 0.0108535 | 0 | 0.0143812 | 0.9928352 | 0.001341 | 0 | 0 | 1 | 6e-07 | 5.8e-06 | 6.243402 | 3 | 3 | non | 0.4854808 | GSE163577 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/FM/plots/ENSG00000105976_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/FM/plots/ENSG00000105976_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/FM/plots/ENSG00000105976_INFLUENCE.png")
ENSG00000111961
Statistics of ENSG00000111961 meta-analisys
kable(sig.genes.df['ENSG00000111961',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000111961 | SASH1 | -0.9815794 | -0.7455253 | -0.5094711 | 0 | 1.54923 | 0.4608812 | 0.120438 | 0 | 0 | 1 | 4e-07 | 4.4e-06 | 6.362231 | 3 | 3 | GSE163577 | 0.9824789 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/FM/plots/ENSG00000111961_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/FM/plots/ENSG00000111961_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/FM/plots/ENSG00000111961_INFLUENCE.png")
ENSG00000115825
Statistics of ENSG00000115825 meta-analisys
kable(sig.genes.df['ENSG00000115825',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000115825 | PRKD3 | 0.0167601 | 0.0240222 | 0.0312843 | 0 | 0.5191845 | 0.771366 | 0.0037052 | 0 | 0 | 1 | 1e-07 | 9e-07 | 7.069345 | 3 | 3 | non | 0.8386532 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/FM/plots/ENSG00000115825_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/FM/plots/ENSG00000115825_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/FM/plots/ENSG00000115825_INFLUENCE.png")
ENSG00000116754
Statistics of ENSG00000116754 meta-analisys
kable(sig.genes.df['ENSG00000116754',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000116754 | SRSF11 | 0.3256895 | 0.4438465 | 0.5620035 | 0 | 1.224757 | 0.54206 | 0.0602853 | 0 | 0 | 1 | 0 | 0 | 9.619338 | 3 | 3 | GSE163577 | 0.4623025 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/FM/plots/ENSG00000116754_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/FM/plots/ENSG00000116754_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/FM/plots/ENSG00000116754_INFLUENCE.png")
ENSG00000120071
Statistics of ENSG00000120071 meta-analisys
kable(sig.genes.df['ENSG00000120071',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000120071 | KANSL1 | -1.831745 | -1.542413 | -1.253081 | 0 | 0.9171046 | 0.3382364 | 0.1476212 | 0 | 0 | 1 | 0 | 0 | 20.70302 | 2 | 2 | syn52293442_hc | 0.7329412 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/FM/plots/ENSG00000120071_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/FM/plots/ENSG00000120071_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/FM/plots/ENSG00000120071_INFLUENCE.png")
ENSG00000135905
Statistics of ENSG00000135905 meta-analisys
kable(sig.genes.df['ENSG00000135905',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000135905 | DOCK10 | -0.4009852 | -0.3086758 | -0.2163665 | 0 | 0.3949198 | 0.8208131 | 0.0470975 | 0 | 0 | 1 | 1e-07 | 6e-07 | 7.206834 | 3 | 3 | syn52293442_hc | 0.5251911 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/FM/plots/ENSG00000135905_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/FM/plots/ENSG00000135905_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/FM/plots/ENSG00000135905_INFLUENCE.png")
ENSG00000139220
Statistics of ENSG00000139220 meta-analisys
kable(sig.genes.df['ENSG00000139220',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000139220 | PPFIA2 | 1.37632 | 1.736388 | 2.096457 | 0 | 3.035227 | 0.2192344 | 0.1837119 | 0.0352467 | 34.10708 | 1.517614 | 0 | 0 | 16.95512 | 3 | 3 | Study43 | 0.5447936 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/FM/plots/ENSG00000139220_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/FM/plots/ENSG00000139220_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/FM/plots/ENSG00000139220_INFLUENCE.png")
ENSG00000144278
Statistics of ENSG00000144278 meta-analisys
kable(sig.genes.df['ENSG00000144278',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000144278 | GALNT13 | 1.160183 | 1.452248 | 1.744313 | 0 | 1.71152 | 0.4249601 | 0.1490157 | 0 | 0 | 1 | 0 | 0 | 17.89233 | 3 | 3 | GSE163577 | 0.6034095 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/FM/plots/ENSG00000144278_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/FM/plots/ENSG00000144278_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/FM/plots/ENSG00000144278_INFLUENCE.png")
ENSG00000150760
Statistics of ENSG00000150760 meta-analisys
kable(sig.genes.df['ENSG00000150760',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000150760 | DOCK1 | -0.7819215 | -0.6277641 | -0.4736067 | 0 | 0.5422418 | 0.7625243 | 0.0786532 | 0 | 0 | 1 | 0 | 0 | 11.56077 | 3 | 3 | syn52293442_hc | 0.459165 | syn52293442_hc |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/FM/plots/ENSG00000150760_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/FM/plots/ENSG00000150760_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/FM/plots/ENSG00000150760_INFLUENCE.png")
ENSG00000151773
Statistics of ENSG00000151773 meta-analisys
kable(sig.genes.df['ENSG00000151773',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000151773 | CCDC122 | 0.0855498 | 0.1081223 | 0.1306949 | 0 | 1.394424 | 0.4979718 | 0.0115168 | 0 | 0 | 1 | 0 | 0 | 16.78948 | 3 | 2 | non | 0.2239178 | GSE163577 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/FM/plots/ENSG00000151773_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/FM/plots/ENSG00000151773_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/FM/plots/ENSG00000151773_INFLUENCE.png")
ENSG00000152583
Statistics of ENSG00000152583 meta-analisys
kable(sig.genes.df['ENSG00000152583',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000152583 | SPARCL1 | 0.0289758 | 0.0424167 | 0.0558577 | 0 | 2.051481 | 0.3585309 | 0.0068578 | 4.7e-06 | 2.509457 | 1.02574 | 4e-07 | 4.4e-06 | 6.362231 | 3 | 3 | GSE163577 | 0.3341087 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/FM/plots/ENSG00000152583_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/FM/plots/ENSG00000152583_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/FM/plots/ENSG00000152583_INFLUENCE.png")
ENSG00000154027
Statistics of ENSG00000154027 meta-analisys
kable(sig.genes.df['ENSG00000154027',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000154027 | AK5 | -0.8222859 | -0.6684595 | -0.5146331 | 0 | 0.5768353 | 0.7494485 | 0.0784843 | 0 | 0 | 1 | 0 | 0 | 13.44044 | 3 | 3 | non | 0.5046798 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/FM/plots/ENSG00000154027_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/FM/plots/ENSG00000154027_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/FM/plots/ENSG00000154027_INFLUENCE.png")
ENSG00000165443
Statistics of ENSG00000165443 meta-analisys
kable(sig.genes.df['ENSG00000165443',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000165443 | PHYHIPL | 0.7006491 | 1.000422 | 1.300195 | 0 | 3.405967 | 0.1821393 | 0.1529482 | 0.0293421 | 41.27953 | 1.702983 | 1e-07 | 6e-07 | 7.203631 | 3 | 3 | Study43 | 0.5639691 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/FM/plots/ENSG00000165443_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/FM/plots/ENSG00000165443_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/FM/plots/ENSG00000165443_INFLUENCE.png")
ENSG00000166710
Statistics of ENSG00000166710 meta-analisys
kable(sig.genes.df['ENSG00000166710',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000166710 | B2M | 0.0394562 | 0.0534254 | 0.0673946 | 0 | 0.1460354 | 0.7023532 | 0.0071273 | 0 | 0 | 1 | 0 | 0 | 10.01175 | 2 | 2 | GSE163577 | 0.5004276 | GSE163577 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/FM/plots/ENSG00000166710_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/FM/plots/ENSG00000166710_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/FM/plots/ENSG00000166710_INFLUENCE.png")
ENSG00000168785
Statistics of ENSG00000168785 meta-analisys
kable(sig.genes.df['ENSG00000168785',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000168785 | TSPAN5 | -1.4284 | -1.119331 | -0.8102619 | 0 | 1.212949 | 0.5452699 | 0.1576911 | 0 | 0 | 1 | 0 | 0 | 8.815846 | 3 | 3 | syn52293442_hc | 0.7551956 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/FM/plots/ENSG00000168785_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/FM/plots/ENSG00000168785_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/FM/plots/ENSG00000168785_INFLUENCE.png")
ENSG00000180776
Statistics of ENSG00000180776 meta-analisys
kable(sig.genes.df['ENSG00000180776',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000180776 | ZDHHC20 | -1.591859 | -1.215958 | -0.8400572 | 0 | 3.076482 | 0.2147585 | 0.1917896 | 0.0428971 | 34.99069 | 1.538241 | 2e-07 | 1.9e-06 | 6.719027 | 3 | 3 | GSE163577,syn52293442_hc | 0.7094684 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/FM/plots/ENSG00000180776_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/FM/plots/ENSG00000180776_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/FM/plots/ENSG00000180776_INFLUENCE.png")
ENSG00000182247
Statistics of ENSG00000182247 meta-analisys
kable(sig.genes.df['ENSG00000182247',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000182247 | UBE2E2 | -0.8912052 | -0.678003 | -0.4648007 | 0 | 0.1084767 | 0.9472063 | 0.1087787 | 0 | 0 | 1 | 4e-07 | 3.6e-06 | 6.445625 | 3 | 3 | syn52293442_hc | 0.4914779 | syn52293442_hc |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/FM/plots/ENSG00000182247_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/FM/plots/ENSG00000182247_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/FM/plots/ENSG00000182247_INFLUENCE.png")
sessionInfo
date()## [1] "Sun May 25 15:56:15 2025"sessionInfo()## R version 4.2.2 (2022-10-31)
## Platform: x86_64-pc-linux-gnu (64-bit)
## Running under: CentOS Linux 7 (Core)
##
## Matrix products: default
## BLAS/LAPACK: /opt/sci-soft/software/FlexiBLAS/3.0.4-GCC-11.2.0/lib64/libflexiblas.so.3.0
##
## locale:
## [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
## [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 LC_PAPER=en_US.UTF-8 LC_NAME=C
## [9] LC_ADDRESS=C LC_TELEPHONE=C LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
##
## attached base packages:
## [1] stats graphics grDevices utils datasets methods base
##
## other attached packages:
## [1] plotly_4.10.4 DT_0.26 knitr_1.41 ggplot2_3.5.2 dplyr_1.0.10 limma_3.54.0
## [7] tibble_3.1.8 metafor_3.8-1 metadat_1.2-0 Matrix_1.5-3 Biobase_2.58.0 BiocGenerics_0.44.0
##
## loaded via a namespace (and not attached):
## [1] tidyselect_1.2.0 xfun_0.35 bslib_0.4.2 purrr_0.3.5 lattice_0.20-45 vctrs_0.6.5
## [7] generics_0.1.3 htmltools_0.5.4 viridisLite_0.4.1 yaml_2.3.6 utf8_1.2.2 rlang_1.1.6
## [13] pillar_1.8.1 jquerylib_0.1.4 glue_1.6.2 withr_2.5.0 DBI_1.1.3 RColorBrewer_1.1-3
## [19] lifecycle_1.0.3 stringr_1.5.0 gtable_0.3.1 htmlwidgets_1.6.0 evaluate_0.19 labeling_0.4.2
## [25] fastmap_1.1.0 crosstalk_1.2.0 fansi_1.0.3 highr_0.9 scales_1.4.0 cachem_1.0.6
## [31] jsonlite_1.8.4 farver_2.1.1 png_0.1-8 digest_0.6.31 stringi_1.7.8 grid_4.2.2
## [37] mathjaxr_1.6-0 cli_3.4.1 tools_4.2.2 magrittr_2.0.3 sass_0.4.4 lazyeval_0.2.2
## [43] dichromat_2.0-0.1 tidyr_1.2.1 pkgconfig_2.0.3 ellipsis_0.3.2 data.table_1.14.6 assertthat_0.2.1
## [49] rmarkdown_2.19 httr_1.4.4 rstudioapi_0.14 R6_2.5.1 nlme_3.1-161 compiler_4.2.2